1 code implementation • 23 Feb 2021 • Brendon Lutnick, Leema Krishna Murali, Brandon Ginley, Avi Z. Rosenberg, Pinaki Sarder
We created a custom pipeline (histo-fetch) to efficiently extract random patches and labels from pathology whole slide images (WSIs) for input to a neural network on-the-fly.
no code implementations • 28 Feb 2020 • Brandon Ginley, Kuang-Yu Jen, Avi Rosenberg, Felicia Yen, Sanjay Jain, Agnes Fogo, Pinaki Sarder
Glomerulosclerosis, interstitial fibrosis, and tubular atrophy (IFTA) are histologic indicators of irrecoverable kidney injury.
1 code implementation • 18 Dec 2018 • Brendon Lutnick, Brandon Ginley, Darshana Govind, Sean D. McGarry, Peter S. LaViolette, Rabi Yacoub, Sanjay Jain, John E. Tomaszewski, Kuang-Yu Jen, Pinaki Sarder
We track network performance improvements as a function of iteration and quantify the use of this pipeline for the segmentation of renal histologic findings on WSIs.