NLP Whack-A-Mole: Challenges in Cross-Domain Temporal Expression Extraction

Incorporating domain knowledge is vital in building successful natural language processing (NLP) applications. Many times, cross-domain application of a tool results in poor performance as the tool does not account for domain-specific attributes. The clinical domain is challenging in this aspect due to specialized medical terms and nomenclature, shorthand notation, fragmented text, and a variety of writing styles used by different medical units. Temporal resolution is an NLP task that, in general, is domain-agnostic because temporal information is represented using a limited lexicon. However, domain-specific aspects of temporal resolution are present in clinical texts. Here we explore parsing issues that arose when running our system, a tool built on Newswire text, on clinical notes in the THYME corpus. Many parsing issues were straightforward to correct; however, a few code changes resulted in a cascading series of parsing errors that had to be resolved before an improvement in performance was observed, revealing the complexity temporal resolution and rule-based parsing. Our system now outperforms current state-of-the-art systems on the THYME corpus with little change in its performance on Newswire texts.