no code implementations • 28 Nov 2023 • Tomáš Svoboda, Tomáš Raček, Josef Handl, Jozef Sabo, Adrián Rošinec, Łukasz Opioła, Wojciech Jesionek, Milan Ešner, Markéta Pernisová, Natallia Madzia Valasevich, Aleš Křenek, Radka Svobodová
The solutions mainly fall into one of the two groups: general data management systems (e. g. Onedata, iRODS, B2SHARE, CERNBox) or very specialised data management solutions (e. g. solutions for biomolecular simulation data, biological imaging data, genomic data).
1 code implementation • 4 Apr 2023 • Adam Hájek, Michal Starý, Filip Jozefov, Helge Hecht, Elliott Price, Aleš Křenek
Identification of experimentally acquired mass spectra of unknown compounds presents a~particular challenge because reliable spectral databases do not cover the potential chemical space with sufficient density.
no code implementations • 17 Feb 2022 • Vojtěch Spiwok, Martin Kurečka, Aleš Křenek
Here we show how this score can be used to drive protein folding simulation by metadynamics and parallel tempering metadynamics.