Search Results for author: Aleš Křenek

Found 3 papers, 1 papers with code

Onedata4Sci: Life science data management solution based on Onedata

no code implementations28 Nov 2023 Tomáš Svoboda, Tomáš Raček, Josef Handl, Jozef Sabo, Adrián Rošinec, Łukasz Opioła, Wojciech Jesionek, Milan Ešner, Markéta Pernisová, Natallia Madzia Valasevich, Aleš Křenek, Radka Svobodová

The solutions mainly fall into one of the two groups: general data management systems (e. g. Onedata, iRODS, B2SHARE, CERNBox) or very specialised data management solutions (e. g. solutions for biomolecular simulation data, biological imaging data, genomic data).

Management

De-novo Identification of Small Molecules from Their GC-EI-MS Spectra

1 code implementation4 Apr 2023 Adam Hájek, Michal Starý, Filip Jozefov, Helge Hecht, Elliott Price, Aleš Křenek

Identification of experimentally acquired mass spectra of unknown compounds presents a~particular challenge because reliable spectral databases do not cover the potential chemical space with sufficient density.

Collective Variable for Metadynamics Derived from AlphaFold Output

no code implementations17 Feb 2022 Vojtěch Spiwok, Martin Kurečka, Aleš Křenek

Here we show how this score can be used to drive protein folding simulation by metadynamics and parallel tempering metadynamics.

Protein Folding

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