1 code implementation • 5 Feb 2024 • Arash Harirpoush, Amirhossein Rasoulian, Marta Kersten-Oertel, Yiming Xiao
We conduct the first systematic benchmark study for variants of 3D U-shaped models (3DUNet, STUNet, AttentionUNet, SwinUNETR, FocalSegNet, and a novel 3D SwinUnet with four variants) with a focus on CT-based anatomical segmentation for thoracic surgery.
no code implementations • 21 Aug 2023 • Soorena Salari, Amirhossein Rasoulian, Hassan Rivaz, Yiming Xiao
Early surgical treatment of brain tumors is crucial in reducing patient mortality rates.
1 code implementation • 6 Aug 2023 • Amirhossein Rasoulian, Arash Harirpoush, Soorena Salari, Yiming Xiao
In the paper, we propose FocalSegNet, a novel 3D focal modulation UNet, to detect an aneurysm and offer an initial, coarse segmentation of it from time-of-flight MRA image patches, which is further refined with a dense conditional random field (CRF) post-processing layer to produce a final segmentation map.
no code implementations • 26 Jul 2023 • Soorena Salari, Amirhossein Rasoulian, Hassan Rivaz, Yiming Xiao
Specifically, two convolutional neural networks were trained jointly to encode image features in MRI and US scans to help match the US image patch that contain the corresponding landmarks in the MRI.
no code implementations • 26 Jul 2023 • Soorena Salari, Amirhossein Rasoulian, Hassan Rivaz, Yiming Xiao
In brain tumor resection, accurate removal of cancerous tissues while preserving eloquent regions is crucial to the safety and outcomes of the treatment.
1 code implementation • 11 Apr 2023 • Amirhossein Rasoulian, Soorena Salari, Yiming Xiao
With a mean Dice score of 0. 44, our technique achieved similar ICH segmentation performance as the popular U-Net and Swin-UNETR models with full supervision and outperformed a similar weakly supervised approach using GradCAM, demonstrating the excellent potential of the proposed framework in challenging medical image segmentation tasks.