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Pattern recognition in the nucleation kinetics of non-equilibrium self-assembly
Specifically, we design a set of 917 DNA tiles that can self-assemble in three alternative ways such that competitive nucleation depends sensitively on the extent of co-localization of high-concentration tiles within the three structures.
Detailed Balanced Chemical Reaction Networks as Generalized Boltzmann Machines
These results illustrate how a biochemical computer can use intrinsic chemical noise to perform complex computations.
The pathway elaboration method for mean first passage time estimation in large continuous-time Markov chains with applications to nucleic acid kinetics
We then compare the performance of pathway elaboration with the stochastic simulation algorithm (SSA) for MFPT estimation on 237 of the reactions for which SSA is feasible.
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