no code implementations • 11 Apr 2024 • Krzysztof Kotowski, Irena Roterman, Katarzyna Stapor
The article pre-sents a new protein intrinsic disorder predictor DisorderUnetLM based on the Attention U-Net convolutional neural network using features from the protein language model ProtTrans.
1 code implementation • Proteins 2022 • Krzysztof Kotowski, Piotr Fabian, Irena Roterman, Katarzyna Stapor
In recent years, a new generation of algorithms for SS prediction based on embeddings from protein language models (pLMs) is emerging.
Multiple Sequence Alignment Protein Secondary Structure Prediction +1
no code implementations • 3 Sep 2022 • Jakub Nalepa, Krzysztof Kotowski, Bartosz Machura, Szymon Adamski, Oskar Bozek, Bartosz Eksner, Bartosz Kokoszka, Tomasz Pekala, Mateusz Radom, Marek Strzelczak, Lukasz Zarudzki, Agata Krason, Filippo Arcadu, Jean Tessier
Tumor burden assessment by magnetic resonance imaging (MRI) is central to the evaluation of treatment response for glioblastoma.
2 code implementations • Brain sciences 2022 • Werner Sommer, Katarzyna Stapor, Grzegorz Kończak, Krzysztof Kotowski, Piotr Fabian, Jeremi Ochab, Anna Bereś, Grażyna Ślusarczyk
Here, we present a new method for detecting a single changepoint in a linear time series regression model, termed residuals permutation-based method (RESPERM).
1 code implementation • Biocybernetics and Biomedical Engineering 2019 • Krzysztof Kotowski, Katarzyna Stapor, Jacek Leski
The areas of improvement include significantly lower averaging error (45% lower RMSE and 37% lower maximum difference than for original implementation) and increased robustness to local minima, strong outliers and corrupted epochs common to real-life EEG signals, especially from low-cost devices.