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Found 3 papers, 2 papers with code
ClaPIM: Scalable Sequence CLAssification using Processing-In-Memory
Specifically, we propose a custom filtering technique that drastically narrows the search space and a search approach that facilitates approximate string matching through a distance function.
CoViT: Real-time phylogenetics for the SARS-CoV-2 pandemic using Vision Transformers
We are attempting to alleviate the computational bottleneck by modifying and applying Vision Transformer, a recently developed neural network model for image recognition, to taxonomic classification and placement of viral genomes, such as SARS-CoV-2.
FiltPIM: In-Memory Filter for DNA Sequencing
Pre-alignment filters substantially reduce computation complexity by filtering potential alignment locations.
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