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Found 2 papers, 2 papers with code
DNABERT-S: Learning Species-Aware DNA Embedding with Genome Foundation Models
To encourage effective embeddings to error-prone long-read DNA sequences, we introduce Manifold Instance Mixup (MI-Mix), a contrastive objective that mixes the hidden representations of DNA sequences at randomly selected layers and trains the model to recognize and differentiate these mixed proportions at the output layer.
Comparison and Benchmark of Graph Clustering Algorithms
Graph clustering is widely used in analysis of biological networks, social networks and etc.
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