CHAMMI: A benchmark for channel-adaptive models in microscopy imaging

2 code implementations • NeurIPS 2023 • Zitong Chen, Chau Pham, Siqi Wang, Michael Doron, Nikita Moshkov, Bryan A. Plummer, Juan C. Caicedo

In this paper, we present a benchmark for investigating channel-adaptive models in microscopy imaging, which consists of 1) a dataset of varied-channel single-cell images, and 2) a biologically relevant evaluation framework.

Anchoring to Exemplars for Training Mixture-of-Expert Cell Embeddings

no code implementations • 6 Dec 2021 • Siqi Wang, Manyuan Lu, Nikita Moshkov, Juan C. Caicedo, Bryan A. Plummer

Analyzing the morphology of cells in microscopy images can provide insights into the mechanism of compounds or the function of genes.

Drug Discovery